Plant intron-splicing efficiency database
WebPlant Intron Splicing Efficiency Database (PISE): exploring splicing of ~1,650,000 introns in Arabidopsis, maize, rice and soybean from ~57,000 public RNA-seq libraries Preprint Full … WebPlant Intron Splicing Efficiency Database Search gene intron ratio levels from Maize public RNA-Seq libraries All Libraries Tutorial Cite History Advanced Options +
Plant intron-splicing efficiency database
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WebSep 16, 2024 · RT-PCR analysis showed that the intron 2 was spliced equally in the wild-type and the complemented plants (Fig. S2), indicating that Emp32 is required for the splicing of nad7 intron 2. Then we detected whether over-expression of Emp32 increases the splicing efficiency of nad7 intron 2 in over-expression plants. WebMar 28, 2024 · Differential splicing efficiency of specific introns is a mechanism that dramatically increases protein diversity, based on selection of alternative exons for the …
WebSep 1, 2024 · containing introns capable of splicing. From the clones correctly expressing zeocin resistance protein 250 intron variants were extracted for further verification of splicing efficiency and capability to enhance gene expression. The generated introns were sequenced. And as a result of this sequencing it was found that only 12 introns WebDec 9, 2024 · Moreover, the splicing efficiency of nad1 introns 1 and 4 and nad4 intron 1 significantly decreased in dek55 compared with the wild type (WT). These results indicate that DEK55 plays a crucial role in RNA editing at multiple sites as well as in the splicing of nad1 and nad4 introns.
WebWelcome to Plant Splicing Efficiency Database(PISE), an online database for exploring 25,000+ Arabidopsis, 3,000+ soybean, 19,000+ rice, 17,000+ maize public RNA-Seq …
WebJun 1, 2024 · Plant Intron Splicing Efficiency Database (PISE): exploring splicingof~1,650,000intronsinArabidopsis,maize,riceand soybeanfrom~57,000publicRNA …
WebJun 1, 2024 · Plant Intron Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice and soybean from ∼57,000 public RNA-seq … restaurants in blue mountain beach flWebJan 7, 2013 · Keeping in mind the above-mentioned insufficiency of plant data, we have performed large-scale analyses of plant introns and splice sites in eight species: A. thaliana, Chlamydomonas reinhardtii, Glycine max, Oryza sativa, Physcomitrella patens, Selaginella moellendorffii, V. vinifera and Zea mays. restaurants in bluewater shopping centreWebNov 9, 2024 · A highly pronounced decrease in the splicing efficiency of nad5 intron 4 as well a weaker reduction for nad2 intron 1 splicing could be detected in ul18-l1 plants (Fig. 4C). A global overexpression of other premature and mature mitochondrial messenger RNAs (mRNAs) was also detected in the mutant (SI Appendix, Fig. S5 A and B). restaurants in bluewaterWebPlant Intron-Splicing Efficiency Database (PISES), Zhailab@SUSTech, Jixian Zhai. An overview of PISE. Welcome to Plant Splicing Efficiency Database (PISE), an online … restaurants in boblingen germanyWebA large-scale analysis of splice sites in eight plant species is performed, using novel algorithms and tools developed by the authors, and putative intronic and exonic cis-regulatory motifs, U12 introns as well as splicing sites in 45 microRNA genes in five plant species are identified. Splicing is one of the major contributors to observed … restaurants in bluff utahWebNov 22, 2024 · Plant Intron-Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice, and soybean from ∼57,000 public RNA-seq … restaurants in bodakdevWebThe process of intron splicing in higher plant genes involves interaction between multiple cis -acting elements and trans -acting factors, such as 5′ splicing site, 3′ splicing site and many protein factors. The process of intron splicing is an important level at which gene expression is regulated. restaurants in boalsburg pa